Changes of sea level, landscape and culture: A review of the south-western Baltic area between 8800 and 4000 BC

The global warming at the end of the last glacial period led to a sea level rise, which induced substantial long-term landscape changes in the southwestern Baltic Sea. During the Preboreal and Boreal periods, this region, bordering on the Ancylus Lake in the east, was dry land with numerous lakes and rivers. However, with the beginning of the Littorina Transgression around 6700 BC, during the Atlantic period, the area became connected to the ocean. People settling along the coast of the former Ancylus Lake, Mesolithic hunter–gatherers, continuously had to adapt to rapid changes.

The Littorina Transgression made a new source available to man: the young Baltic Sea. Important settlement sites were founded in the coastal regions, and were consumed one by one by the constantly rising sea level. At the time of the decline of the sea level rise and the beginning consolidation of the coast lines, a socially motivated turn towards a productive economy started. Hunting and fishery were widely replaced by agriculture and stock farming.

To understand the interplay between all of these developments, it is necessary that scientists from a variety of disciplines undertake collective investigations. This paper presents first culture-historical, palaeozoological, palaeobotanical, palaeoecological and palaeogeographical results yielded by from the multidisciplinary research group SINCOS (Sinking Coasts) and uses these to create a new comprehensive picture of the development of the south-western Baltic Sea region during the Ancylus Lake and Littorina Sea stages.     

A novel approach for the identification of pointer years

In the context of extreme event ecology, identification of pointer years has become a central aspect of tree-ring research. However, the variety of methods employed for pointer year detection since the introduction of the concept in 1979 impedes a direct comparison among studies. Moreover, most commonly used methods partly rely on arbitrarily selected thresholds, resulting in a potentially inconsistent application of those means. To overcome these discrepancies, we here introduce the “standardized growth change” method SGC, which relies on probability density functions of standardized year-to-year ring width differences and internationally accepted significance levels. To evaluate the performance of SGC, it is applied to 1000 pseudo-populations with known properties as well as to an existing Scots pine tree ring data set and compare the results derived from SGC to the four most frequently applied pointer year detection methods. Our comparative evaluation indicates SGC to supersede the other considered methods. In particular, it identified all artificially introduced pointer years in the pseudo-populations, whereas the other methods missed between 3 and 96 percent of known events. A detailed evaluation of misclassifications by the other approaches points out method-specific weaknesses. Finally, we provide technical aspects and recommendations for the application of SGC in a broader context.     

Orchid seed sensitivity to nitrate reflects habitat preferences and soil nitrate content

• Orchids are distributed around the world, however, the factors shaping their specific distribution and habitat preferences are largely unknown. Moreover, many orchids are at risk of becoming threatened as landscapes change, sometimes declining without apparent reason. One important factor affecting plant distribution is nutrient levels in the environment. Nitrates can inhibit not only orchid growth and persistence, but also seed germination.
• We used in vitro axenic cultures to exactly determine the germination sensitivity of seven orchid species to nitrates and correlated this with soil properties of the natural sites and with the species’ habitat preferences.
• We found high variation in response to nitrate between species. Orchids from oligotrophic habitats were highly sensitive, while orchids from more eutrophic habitats were almost insensitive. Sensitivity to nitrate was also associated with soil parameters that indicated a higher nitrification rate.
• Our results indicate that nitrate can affect orchid distribution via direct inhibition of seed germination. Nitrate levels in soils are increasing rapidly due to intensification of agricultural processes and concurrent soil pollution, and we propose this increase could cause a decline in some orchid species.

     

Schistocephalus solidus and Ligula intestinalis: Pinocytosis by the tegument

Using ruthenium red as a macromolecule, endocytosis was demonstrated in the plerocercoid of Ligula intestinalis and adult Schistocephalus solidus. Uptake, transport across the tegument, and exocytosis across the basal plasma membrane occurred within 6 min. The types of vesicles in the tegument of L. intestinalis are redescribed and their former classification is modified. The vertical and longitudinal distribution of pinosomes in the tegument of adult S. solidus and L. intestinalis plerocercoids were determined. The possible role of macromolecular uptake in the economy of pseudophyllidean tapeworms is discussed with particular reference to growth and defence of an unencysted larval stage in the tissues of the intermediate host.     

Identification and comprehensive analysis of the CLV3/ESR‐related (CLE) gene family in Brassica napus L.

• The CLE (CLAVATA3/ESR) gene family, encoding a group of small secretory peptides, plays important roles in cell‐to‐cell communication, thereby controlling a broad spectrum of development processes. The CLE family has been systematically characterized in some plants, but not in Brassica napus.
• In the present study, 116 BnCLE genes were identified in the B. napus genome, including seven unannotated, six incorrectly predicted and five multi‐CLE domain‐encoding genes. These BnCLE members were separated into seven distinct groups based on phylogenetic analysis, which might facilitate the functional characterization of the peptides.
• Further characterization of CLE pre‐propeptides revealed 31 unique CLE peptides from 45 BnCLE genes, which may give rise to distinct roles of BnCLE and expansion of the gene family. The biological activity of these unique CLE dodecamer peptides was tested further through in vitro peptide assays. Variations in several important residues were identified as key contributors to the functional differentiation of BnCLE and expansion of the gene family in B. napus. Expression profile analysis helped to characterize possible functional redundancy and sub‐functionalization among the BnCLE members.
• This study presents a comprehensive overview of the CLE gene family in B. napus and provides a foundation for future evolutionary and functional studies.

     

Single pot sequential crystallization-distillation as a new purification procedure

A new purification procedure exploiting the simultaneous presence of a solid, liquid, and gas phase in a low surface area system is proposed and discussed. The assumptions of vanishingly low diffusion coefficients in the solid phase and that of the presence of a single “effective impurity” allow to plan the sequence of operations starting from the knowledge of just the melting and boiling points of the substance to be purified and of those of the “effective impurity”. Examples and results are presented.     

Molecular mechanisms underlying oxygen reception

In this review, modern concepts on molecular mechanisms underlying reception of the oxygen level in natural O₂-sensory structures and cellular in vitro models are considered and discussed.Neirofiziologiya/Neurophysiology, Vol.36, No.4, pp.330–347, July–August, 2004.     

Habitat characteristics contributing to local occupancy and habitat use in rock pool <Emphasis Type="Italic">Daphnia</Emphasis> metapopulations

The effects of invasive macrophytes, water level fluctuations and predation on freshwater unionids Pyganodon grandis and Utterbackia imbecillis were studied in three small impoundments in Northeastern Texas in 2003–2005. Mussel density was sampled with quadrats. Mortality, associated with the water level fluctuations and predation, was estimated by collecting dead shells on the shore at about two month intervals. In two ponds, horizontal distribution of unionids was limited by dense beds of invasive and noxious macrophytes (mainly Eurasian watermilfoil Myriophyllum spicatum and American lotus Nelumbo lutea): mussel densities were significantly lower in these macrophyte beds (P < 0.001). In the third pond with the lowest density of macrophytes (stonewort Chara sp.), unionids were distributed more evenly, and the average unionid biomass was the highest among all ponds studied. Vertical distribution of unionids in all ponds was likely limited by low oxygen at depth >2 m. The total amount of shells found on the shore per year varied from 0.1% to 28% of the total population in the pond and was negatively correlated with water level (r = −0.72 to −0.81, P < 0.005). Mammalian predators consumed up to 19% of the total unionid population and predation was facilitated by water level fluctuations. Handling editor: K. Martens     

Characterization of RNA primers synthesized by the human breast cancer cell DNA synthesome

We previously reported on the purification and characterization of a functional multi‐protein DNA replication complex (the DNA synthesome) from human cells and tissues. The synthesome is fully competent to carry‐out all phases of the DNA replication process in vitro. In this study, DNA primase, a component of the synthesome, is examined to determine its activity and processivity in the in vitro synthesis and extension of RNA primers. Our results show that primase activity in the P4 fraction of the synthesome is 30‐fold higher than that of crude cell extracts. The synthesome synthesizes RNA primers that are 7–10 ribonucleotides long and DNA primers that are 20–40 deoxyribonucleotides long using a poly(dT) template of exogenous single‐stranded DNA. The synthesome‐catalyzed RNA primers can be elongated by E. coli DNA polymerase I to form the complementary DNA strands on the poly(dT) template. In addition, the synthesome also supports the synthesis of native RNA primers in vitro using an endogenous supercoiled double‐stranded DNA template. Gel analysis demonstrates that native RNA primers are oligoribonucleotides of 10–20 nt in length and the primers are covalently link to DNA to form RNA‐primed nascent DNA of 100–200 nt. Our study reveals that the synthesome model is capable of priming and continuing DNA replication. The ability of the synthesome to synthesize and extend RNA primers in vitro elucidates the organizational and functional properties of the synthesome as a potentially useful replication apparatus to study the function of primase and the interaction of primase with other replication proteins. J. Cell. Biochem. 106: 798–811, 2009. © 2009 Wiley‐Liss, Inc.